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GitHub
Email Fernando
Main site
Overview
Overview
Initial System Setup
Computational Pathology Pipeline
Step 1 – Data & Cohorts
Overview
PFP-01: Project folder & path blocks
Step 2 – Slides & Viewing
Overview
VIEW-01: Digital microscope blocks
OpenSeadragon
Step 3 – Preprocessing & QC
Overview
QC-01: Grossing & QC blocks
libvips
Step 4 – Annotation & Labeling
Overview
LAB-01/02: GeoJSON to masks
Step 5 – Feature Extraction
Overview
FEAT-01: Morphometrics & texture
Step 6 – ML & Modeling
Overview
ML-01: Classical + deep starts
Step 7 – Evaluation & Explainability
Overview
EVAL-01: Confusion, ROC, heatmaps
Step 8 – Pipelines & Deployment
Overview
PIPE-01: Streamlit + Docker starter
Image Datasets
Overview
GitHub
GDC Data Portal
Learning Material
Overview
Histopathology
Digital Pathology
YouTube Channels
Mathematics
Overview
Linear Algebra
Calculus
Probability
Statistics
Histopathology
Overview
Normal Histology
Histopathology
General Pathology
GitHub
Email Fernando
Main site
General Pathology
Link mechanisms to slide appearances and measurement concepts used in computational workflows.